Seminar: Aktuelle Themen der Bioinformatik

Dirk Metzler, Sommersemester 2008
S; 2 SWS; Schein; Zuordnung: ThBI, PTBI, T3;
Mi, 14:00 - 16:00, RM 11-15 / 11;
Do, 10:00 - 12:00, RM 11-15 / 9;



PDF: Hinweise zum Seminar

Mi. 7.05.2008

Zero tolerance ecology


 

T.G. Martin, B.A. Wintle, J.R. Rhodes, P.M. Kuhnert, S.A. Field, S.j. Low-Choy, A.J. Tyre and H.P. Possigham. Zero tolerance ecology: improving ecological inference by modelling the source of zero observations. Ecol. Letters, 8(11):1235-1246, 2005.


Do. 8.05.2008

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Mi. 14.05.2008

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Do. 15.05.2008

How reliable are empirical genomic scans for selective sweeps?


 

K.M. Teshima, G. Coop and M. Przeworski. How reliable are genomic scans for selective sweeps? Genome Res. 16:702-712, 2006.


Mi. 21.05.2008

Variations on RNA folding and alignment


 

A.F. Bompfünewerer, R.Backofen, S.H. Bernhart, J. Hertel, I.L. Hofacker, P.E. Stadler and S.Will. Variations on RNA folding and alignment: lessons from Benasque. J. Math. Biol. 56:129-144, 2008.


Do. 22.05.08

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Mi. 28.05.2008

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Do. 29.05.2008

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Mi. 4.06.2008

A Coalescent-Based Method for Detecting and Estimating Recombination From Gene Sequences


 

G. McVean, P. Awadalla and P. Fearnhead. A coalescent-based method for detecting and estimating recombination from gene sequences. Genentics 160:1231-1241, 2002.


Do. 5.06.2008

Estimating Recombination Rates From Single-Nucleotide Polymorphisms Using Summary Statistics


 

B. Padhukasahasram, J.D. Wall, P.Marjoram and M. Nordborg. Estimating recombination rates from single-nucleotide polymorphisms using summary statistics. Genetics 174:1517-1528, 2006.


Mi. 11.06.2008

Inference on Recombination and Block Structure Using Unphased Data


 

C.Wiuf. Inference on recombination and block structure using unsphased data. Genetics 166:537-545, 2004.


Do. 12.06.2008

Accuracy of Coalescent Likelihood Estimates


 

J. Felsenstein. Accuracy of coalescent likelihood estimates: do we need more sites, more sequences or more loci? Mol. Biol. Evol. 23(3):691-700, 2005.


Mi. 18.06.2008

Multiple pattern matching: a Markov chain approach


 

M.E. Lladser, M.D. betterton and R. Knight. Multiple pattern matching: a Markov chain approach. J. Math. Biol. 56:51-92, 2008.


Do. 19.06.2008

Species Trees from Gene Trees: Reconstructing Bayesian Posterior Distributions of a Species Phylogeny Using Estimated Gene Tree Distributions


 

L. Liu and D.K. Pearl. Species trees from gene trees: Reconstructing bayesian posterior distributions of a species phylogeny using estimated gene tree distributions. Syst. Biol. 56(3):504-514, 2007.


Mi. 25.06.08

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Do. 26.6.08

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Mi. 02.07.2008

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Do. 3.07.2008

The evolutionary forest algorithm


 

S.C. Leman, M.K. Uyenoyama, M. Lavine and Y. Chen. The evolutionary forest algorithm. Bioinformatics 23(15):1962-1968, 2007.



Ronja Düffel ,IMPRESSUM

Last modified: Tue Jul 01 11:20:48 CEST 2008