Biochemical Links and Home Pages

Table of contents:

Lists of Bioservers

• Virtual Library for Biosciences (Harvard)(short version)
  (long version)
  • Biomolecules
  • Biochemistry, Biophysics, and Molecular Biology (Biosciences)
• Pedro's BioMolecular Research Tools (Mirror in Germany)
• Biology Servers List in USGS (U.S. Geological Survey, USA)
• The Whole Internet Catalogue:
  • Science & Technology
  • Biologie
• Hopkins University BioInformatics Web Server (with a lot fo links to BioWeb servers)
• Molecular Biology WWW server, a short list of important sites
• NetBiochem - other Biochemistry Sites (Research|Education|Publication|Job openings)
• BioData Client Navigator

EMBnet (Europe)

• EMBL Heidelberg (European Molecular Biologie Laboratory)
• EMBnet Overview
• EMBnet CSC BioBox
• EMBnet ftp sites
• European Bioinformatics Institute (EBI, UK)
• Network Browser for Databanks in Molecular Biology SRSWWW (EMBL)
  (contains Medline)

BioNet(USA)

• BioNetwork (USA)
• Bio net Gopher server (USA)
• Bio-Databases and Information sources (gopher, USA)

Databanks

• Molecular Biology WWW server (links to a few databanks)
• Biologists Search Palette (Freiburg)
• Enzyme Database (Missouri, USA)
• Enzyme Database (Geneva, Switzerland)
• MycDB , the Mycobacterium database
• Saccharomyces Genomic Information Resource (Stanford, USA)
  
• Index of Databases in the University of Geneva
  Databases in University of Geneva:
  • SWISS-PROT Top page Protein sequence data base
  • PROSITE A dictionary of protein sites and patterns
  • SeqAnalRef Sequence Analysis Bibliographic Reference Data Bank
  • SWISS-2DPAGE Two-dimensional Polyacrylamide Gel Electrophoresis Database
  • SWISS-3DIMAGE Images of crystallized proteins
• Network Browser for Databanks in Molecular Biology SRSWWW (EMBL)
  
• QUEST Protein Database Center (USA), contains 2D Gel Protein Databases
• SBASE (Trieste, Italy), Protein sequence data bank
• PDB WWW-Server (Brookhaven Protein Data Bank)
  PDB Gopher Server
  PDB FTP-Server
  
• Hopkins Bio-Informatics Home Page, hosts interfaces to various Databanks:
  • NRL_3D-Web (Protein structure Database, USA)
  • GenQuest, comparison of DNA and Protein sequences
  • REBASE - The Restriction Enzyme Database
  • EC Enzyme- An Enzyme classification database
  • and more...
• BCM Search Launcher search sequences of: proteins , nucleic acids, (other things under construction)

Proteins

• QUEST Protein Database Center (USA), enthält 2D Gel Protein Databases
• SBASE (Trieste, Italien), Protein sequence data bank
• Electronic Protein Science Home Page (A Publication of the Protein Society, USA)

  Protein Structures

• The Principles of Protein Structure , an Internet course (VSNS-PPS MAIN INDEX, UK)
• PDB WWW-Server (Brookhaven Protein Data Bank)
  PDB Gopher Server
  PDB FTP-Server
  Some files from the PDB ftp-server are on the local disk to minimize transfer times:
  • README
  • advisory.doc
  • ftphelp.txt
  • how2dnld.txt
• PDB ftp mirror in EMBL-Heidelberg (Germany), only compressed (FTP Directory /pub/databases/pdb_mirror/all_entries/compressed)
• EBI (European Bioinformatics Institute) ftp server with a mirror of data from the EMBL_Heidelberg in: /pub/databases (for more info read the .mirror file in this directory)
• NRL_3D-Web (Proteinstruktur Database, USA)
• Protein structure: beta/alpha (TIM)-barrel (UK)
• SCOP: Structural Classification of Proteins (UK)
• Center for Structural Biology (Florida, USA) (Analysis and prediction of protein structure)

Molekular Structures

• Crystallography (WWW Virtual Library, Swiss)
• The NIH Guide to Molecular Modeling (USA)
• Pedro's BioMolecular Research Tools (Mirror in Germany)
• Representation Models in Molecular Graphics (.ch)
• Birkbeck College, Department of Crystallography (UK)

Info about Journals

• Journal TOC indexes of about 80 Journals (gopher, .fr)
  • index of all available issues
• On line Journal Information (USA)
• biology-journal-contents index (wais)

Info about Software

• MolScript (description and manual)
• RasMol V2.5 Molecular Visualisation Program (description and manual)
• Melanie Software Packages for 2D PAGE Analysis
• Access to on-line analysis tools
• Swiss-Model Automated Protein Modelling Server
• ChemDraw
• Software in Chemistry, Biochemistry & Biotechnology, eine Liste der Software für SGI-Computer
• Conferences and Workshops
  • Meetings in Bioscience and Medicine (Uni-Rostock)
  • FEBS - MEETING 1995

  Newsgroups and mailing lists

  • BIOSCI, WWW-server about bionet Newsgroups (archives,...)
  • BIOSCI/bionet Frequently Asked Questions (FAQ) (WWW-server)
  • Bionet newsgroups
  • Search Bionet USENET Articles
  • News Groups: Biochemistry, Biology, Molecular Biology and Chemistry (.edu)
  • Search List of Discussion Groups (.edu)
  • Mailing lists: General Biology/Biophysics/Biochemistry (.au)
  • Publicly Accessible Mailing Lists: sciences (.com)
  • HUM-MOLGEN Mailing list

  Tools

  • WebElements
  • Akronyme / acronyms (FU-Berlin, Germany)
  • Metabolism (searchable index of reactions and pathways)
  • List of all amino acids (FU-Berlin, Germany) (abrivations, structure, mass, iso-pH, CAS-number)

  Companies

  • List of Commercial Net sites for Molecular Biologists
  • Biotechnology Companies (HUM-MOLGEN, Uni-Rostock)
  • The Fisher Scientific Internet Catalog
  • The Millipore On-line Catalog (USA)
  • DuPont (Performance Lubricants)
  • Molecular Simulations Inc.
  • Spectrocell
  • Indigo Instruments, Molecular Models
  • Cambridge Scientific
    • ChemDraw
  • Bruker(Germany)
  • FREIHOFER AG, Die wissenschaftlichen Buchhandlungen
  • Mettler-Toledo
  • Molecular Dynamics
  • New England Bioloabs
  • PharmInfoNet
  • BioData Navigator

  other Links

  • Darwin, a Computational Biochemistry Research Tool (Switzerland)
  • Links To WWW pages which may be of interest to computational chemists
  • Biologists Search Palette (Freiburg)
  • Education on: Molecular Dynamics | X-Ray Diffraction | spectroscopy (USA)

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  A list of biochemistry related Home Pages

  German Home Pages

  • Institute of Organic Chemistry and Biochemistry (Freiburg)
  • Max-Planck-Institute (MPI) for Biochemistry (Munich)
  • Max-Planck-Institute (MPI) for Biophysical Chemistry (Göttingen)
  • Institute for Molekular Biotechnologie (Jena)
  • Institute for Biology (Humboldt-Uni, Berlin)
  • Biocenter Wuerzburg
  • H U M - M O L G E N, Internet Communication Forum in Human Molecular Genetics (Uni-Rostock)

  European Home Pages

  Holland

  • Chemistry Dept. of the University of Groningen (Holland)

    Italy

  • IIGB (Italy)

    Sweden

  • Faculty of Mathematics and Natural Sciences (Göteborg)
  • Department of Cell and Molecular Biologie (Karolinska Institute)

    Switzerland

  • Geneva Molecular Biology Server
  • Molecular biology related services (Swiss)
  • ETH Zuerich Home Page (Switzerland)
  • Gruppe für Informatikgestützte Chemie (van Gunsteren, ETH Zürich)
  • Computational Biochemistry Research Group (ETH Zürich)
  • Biocomputing & Modeling University of Zuerich

    United Kingdom

  • The Department Of Biochemistry and Molecular Biology (Leeds, UK)
  • Biochemistry Graphics Room Aberdeen University (UK)
  • Birkbeck College Crystallography Homepage (UK)
  • Laboratory of Molecular Biophysics (Oxford, UK)
  • The O.C.M.S. Home Page (Oxford Centre for Molecular Sciences, UK)
  • The Barton Group Home Page (Oxford, UK)

  Home Pages in the rest of the world

  Taiwan

  • National Cheng-Kung Biochem Dept. (Taiwan, in Chinese, have fun :-)

    USA

  • CWRU Department of Biochemistry WWW Server (Cleveland, USA)
  • University of Minnesota College of Biological Sciences (USA)
  • W. M. Keck Center for Computational Biology, Rice University (USA)
  • MSDS (Material Safety Data Sheet Searches, USA)
  • Center for Structural Biology (Florida, USA) (Analysis and prediction of protein structure)
  • Department of Biophysics Home Page(Boston University School of Medicine)
  • Harvard Biological Laboratories - Genome Research (USA)
  • Dept. of Biochem. & Mol. Biol. Columbia Uni.(USA)
  • Dental Biochem's Home Page, University of Pennsylvania (USA)
  • Laboratory of Molybdoenzyme Research, Uni. Florida (USA)
  • Hopkins Bio-Informatics Home Page
  • NetBiochem ( Medical Biochemistry center)
  • Institute for Molecular Virology (University of Wisconsin-Madison)
  • The Biophysical Society Home Page

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  gf and mh, 29.Jun.95