Seminar: Aktuelle Themen der Bioinformatik

Dirk Metzler, Sommersemester 2007
S; 2 SWS; Schein; Zuordnung: ThBI, PTBI;
Mi, 14:00 - 16:00, RM 11-15 / 9;
Do, 10:00 - 12:00, RM 11-15 / 9;

PDF: Hinweise zum Seminar

	A sufficient condition for reducing recursions in hidden markov models
6.06.2007	Tämur Ali Khan
	Y.S. Song. A sufficient condition for reducing recursions in hidden Markov models. Bull Math Biol, 68(2):361-84, 2006.
	Bayesian Segmental Models with Multiple Sequence Alignment Profiles for Protein Secondary Structure and Contact Map Prediction
20.06.2007	Maxim Knoll
	W. Chu, Z. Ghahramani, A. Podtelezhnikov, and D.L. Wild. Bayesian segmental models with multiple sequence alignment profiles for protein secondary structure and contact map prediction. IEEE/ACM Trans Comput Biol Bioinform, 3(2):98-113, 2006.
	Gibbs sampler for statistical multiple alignment
21.06.2007	Marten Rosselli
	J.L. Jensen and J. Hein. Gibbs sampler for statistical multiple alignment. Statistica Sinica, 15(4):889-908, 2004.
	A probabilistic model for gene content evolution with duplication, loss, and horizontal transfer
27.06.2007	Lyse P. Gatcheussi
	M. Csürös and I. Miklós. A Probabilistic Model for Gene Content Evolution with Duplication, Loss, and Horizontal Transfer. In Research in Computational Molecular Biology, 10th Annual International Conference, RECOMB 2006, Venice, Italy, April 2-5, 2006. Proceedings, volume 3909 of Lecture Notes in Computer Science, pages 206-220, 2006.
	Relaxed Phylogenetics and Dating with confidence
28.06.2007	Prisca Monye
	A.J. Drummond, S.Y. Ho, M.J. Phillips, and A. Rambaut. Relaxed phylogenetics and dating with confidence. PLoS Biol, 4(5):e88, 2006.
	Efficient Detection Of Network Motifs
4.07.2007	Alexander Grimme
	S. Wernicke. Efficient detection of network motifs. IEEE/ACM Trans Comput Biol Bioinform, 3(4):347-59, 2006.
	Bayesian logistic regression using a perfect phylogeny
11.07.2007	John Philipp de Graaff
	T.G. Clark, M. De Iorio, and R.C. Griffiths. Bayesian logistic regression using a perfect phylogeny. Biostatistics, 8(1):32-52, 2007.
	Efficient Methods for Estimating Amino Acid Replacement Rates
12.07.2007	Tobias Gontermann
	L. Arvestad. Efficient methods for estimating amino acid replacement rates. J Mol Evol, 62(6):663-73, 2006
	Three-dimensional shape-structure comparison method for protein classification.
18.07.2007	Tim Föller
	P. Daras, D. Zarpalas, A. Axenopoulos, D. Tzovaras, and M.G. Strintzis. Three-dimensional shape-structure comparison method for protein classification. IEEE/ACM Trans Comput Biol Bioinform, 3(3):193-207, 2006.
	Maximal Accurate Forests from Distance Matrices.
18.07.2007	Roozbeh Hassanvand
	C. Daskalakis, C. Hill, A. Jaffe, R. Mihaescu, E. Mossel, and S. Rao. Maximal Accurate Forests from Distance Matrices. In Research in Computational Molecular Biology, 10th Annual International Conference, RECOMB 2006, Venice, Italy, April 2-5, 2006. Proceedings, volume 3909 of Lecture Notes in Computer Science, pages 281-295, 2006.
	Motif Search in Graphs: Application to Metabolic Networks
19.07.2007	Sinan Öz
	V. Lacroix, C.G. Fernandes, and M.F. Sagot. Motif search in graphs: application to metabolic networks. IEEE/ACM Trans Comput Biol Bioinform, 3(4):360-8, 2006.